pyLattice

A python library for advanced lattice light-sheet image analysis.

Welcome!

Visit pyLattice on Github

fig1

Installation

clone or download the repository

pip install pylattice
pip install -r requirements.txt
cd src/jupyter
jupyter notebook

You can find the package on pypi.

in browser open

src/jupyter/latticeFrame_showFrame.ipynb

Test data

A small test data set can be found here: https://www.dropbox.com/sh/znznvp1lmvwfykp/AADzJB456aFHll1bYCPzdQhNa?dl=0

Manual

Please read the manual to get started.

Tutorials

Please find tutorials to pyLattice here

Cite

Please cite our work if you find pyLattice useful: https://doi.org/10.1091/mbc.E18-06-0375